SeqData – Annotated biological sequence data

SeqData is a Python package for loading genomics sequenced-based data from a variety of file formats into xarray objects. SeqData provides a unified interface for loading data from:

• TSV – tabular data

• FASTA – sequence data

• BED – genomic intervals

• BAM – sequence alignments

• BigWig – continuous genomic data

• VCF – genomic variants

SeqData is designed to be used via its Python API.

Getting started

• Install SeqData

• Browse the main API

Contributing

SeqData is an open-source project and we welcome contributions from the community.